Pepe A, Goodman A, Muench A, Crosas M, Erdmann C. How Do Astronomers Share Data? Reliability and Persistence of Datasets Linked in AAS Publications and a Qualitative Study of Data Practices among US Astronomers. PLoS ONE. 2014;9 (8).Abstract

We analyze data sharing practices of astronomers over the past fifteen years. An analysis of URL links embedded in papers published by the American Astronomical Society reveals that the total number of links included in the literature rose dramatically from 1997 until 2005, when it leveled off at around 1500 per year. The analysis also shows that the availability of linked material decays with time: in 2011, 44% of links published a decade earlier, in 2001, were broken. A rough analysis of link types reveals that links to data hosted on astronomers' personal websites become unreachable much faster than links to datasets on curated institutional sites. To gauge astronomers' current data sharing practices and preferences further, we performed in-depth interviews with 12 scientists and online surveys with 173 scientists, all at a large astrophysical research institute in the United States: the Harvard-Smithsonian Center for Astrophysics, in Cambridge, MA. Both the in-depth interviews and the online survey indicate that, in principle, there is no philosophical objection to data-sharing among astronomers at this institution. Key reasons that more data are not presently shared more efficiently in astronomy include: the difficulty of sharing large data sets; over reliance on non-robust, non-reproducible mechanisms for sharing data (e.g. emailing it); unfamiliarity with options that make data-sharing easier (faster) and/or more robust; and, lastly, a sense that other researchers would not want the data to be shared. We conclude with a short discussion of a new effort to implement an easy-to-use, robust, system for data sharing in astronomy, at, and we analyze the uptake of that system to-date.

Goodman A, Pepe A, Blocker AW, Borgman CL, Cranmer K, Crosas M, Stefano RD, Gil Y, Groth P, Hedstrom M, et al. Ten Simple Rules for the Care and Feeding of Scientific Data. PLoS computational biology. 2014;10 (4).
Castro E, Garnett A. Building a Bridge Between Journal Articles and Research Data: The PKP-Dataverse Integration Project. International Journal of Digital Curation [Internet]. 2014;9 :176-184. Publisher's VersionAbstract
A growing number of funding agencies and international scholarly organizations are requesting that research data be made more openly available to help validate and advance scientific research. Thus, this is an opportune moment for research data repositories to partner with journal editors and publishers in order to simplify and improve data curation and publishing practices. One practical example of this type of cooperation is currently being facilitated by a two year (2012-2014) one million dollar Sloan Foundation grant, integrating two well-established open source systems: the Public Knowledge Project’s (PKP) Open Journal Systems (OJS), developed by Stanford University and Simon Fraser University; and Harvard University’s Dataverse Network web application, developed by the Institute for Quantitative Social Science (IQSS). To help make this interoperability possible, an OJS Dataverse plugin and Data Deposit API are being developed, which together will allow authors to submit their articles and datasets through an existing journal management interface, while the underlying data are seamlessly deposited into a research data repository, such as the Harvard Dataverse. This practice paper will provide an overview of the project, and a brief exploration of some of the specific challenges to and advantages of this integration.
Honaker J, D’Orazio V. Statistical Modeling by Gesture: A graphical, browser-based statistical interface for data repositories. Extended Proceedings of ACM Hypertext 2014 [Internet]. 2014. Publisher's VersionAbstract
We detail our construction of TwoRavens, a graphical user interface for quantitative analysis that allows users at all levels of statistical expertise to explore their data, describe their substantive understanding of the data, and appropriately construct and interpret statistical models. The interface is a browser-based, thin client, with the data remaining in an online repository, and the statistical modeling occurring on a remote server.  In our implementation, we integrate with tens of thousands of datasets from the Dataverse repository, and the large library of statistical models available in the Zelig package for the R statistical language.  Our interface is entirely gesture-driven, and so easily used on tablets and phones.  This, in combination with being browser-based, makes data exploration and quantitative reasoning easily portable to the classroom with minimal infrastructure or technology overhead.
Rajasekar A, Sankaran S, Lander H, Carsey T, Crabtree J, Kum H-C, Crosas M, King G, Zhan J. Sociometric Methods for Relevancy Analysis of Long Tail Science Data. Social Computing (SocialCom), 2013 International Conference on. IEEE. 2013 :1-6.Abstract

As the push towards electronic storage, publication, curation, and discoverability of research data collected in multiple research domains has grown, so too have the massive numbers of small to medium datasets that are highly distributed and not easily discoverable - a region of data that is sometimes referred to as the long tail of science. The rapidly increasing, sheer volume of these long tail data present one aspect of the Big Data problem: how does one more easily access, discover, use, and reuse long tail data to lead to new multidisciplinary collaborative research and scientific advancement? In this paper, we describe Data Bridge, a new e-science collaboration environment that will realize the potential of long tail data by implementing algorithms and tools to more easily enable data discoverability and reuse. Data Bridge will define different types of semantic bridges that link diverse datasets by applying a set of sociometric network analysis (SNA) and relevance algorithms. We will measure relevancy by examining different ways datasets can be related to each other: data to data, user to data, and method to data connections. Through analysis of metadata and ontology, by pattern analysis and feature extraction, through usage tools and models, and via human connections, Data Bridge will create an environment for long tail data that is greater than the sum of its parts. In the project's initial phase, we will test and validate the new tools with real-world data contained in the Data verse Network, the largest social science data repository. In this short paper, we discuss the background and vision for the Data Bridge project, and present an introduction to the proposed SNA algorithms and analytical tools that are relevant for discoverability of long tail science data.

Altman M, Crosas M. The Evolution of Data Citation: From Principles to Implementation. IASSIST Quarterly [Internet]. 2013;37 :62. Publisher's VersionAbstract
Data citation is rapidly emerging as a key practice in support of data access, sharing, reuse, and of sound and reproducible scholarship. In this article we review the evolution of data citation standards and practices – to which Sue Dodd was an early contributor – and the core principles of data citation that have emerged through a collaborative synthesis. We then discuss an example of the current state of the practice, and identify the remaining implementation challenges.
Gibbs E, Lin L, Quigley E, Tang R. Dataverse Usability Evaluation: Final Report. 2013 :1-18. dataverse_usability_report-participant_omitted.pdf
Crosas M. A Data Sharing Story. Journal of eScience Librarianship [Internet]. 2012;1 :173-179. Publisher's VersionAbstract
From the early days of modern science through this century of Big Data, data sharing has enabled some of the greatest advances in science. In the digital age, technology can facilitate more effective and efficient data sharing and preservation practices, and provide incentives for making data easily accessible among researchers. At the Institute for Quantitative Social Science at Harvard University, we have developed an open-source software to share, cite, preserve, discover and analyze data, named the Dataverse Network. We share here the project’s motivation, its growth and successes, and likely evolution.
Crosas M. The Dataverse Network: An Open-source Application for Sharing, Discovering and Preserving Data. D-Lib Magazine [Internet]. 2011;Volume 17. Publisher's VersionAbstract
The Dataverse Network is an open-source application for publishing, referencing, extracting and analyzing research data. The main goal of the Dataverse Network is to solve the problems of data sharing through building technologies that enable institutions to reduce the burden for researchers and data publishers, and incentivize them to share their data. By installing Dataverse Network software, an institution is able to host multiple individual virtual archives, called "dataverses" for scholars, research groups, or journals, providing a data publication framework that supports author recognition, persistent citation, data discovery and preservation. Dataverses require no hardware or software costs, nor maintenance or backups by the data owner, but still enable all web visibility and credit to devolve to the data owner.
Christian T-mai, Crabtree J, Mcgovern N, Altman M. Overview of SafeArchive : An Open-Source System for Automatic Policy-Based Collaborative Archival Replication. In: iPres. Vol. 02. ; 2011. Publisher's VersionAbstract
Altman M, Crabtree J. Using the SafeArchive System: TRAC-Based Auditing of LOCKSS. Proceedings of Archiving 2011 [Internet]. 2011 :165-170. Publisher's Version
Altman M, Adams M, Crabtree J, Donakowski D, Maynard M, Pienta A, Young C. Digital Preservation Through Archival Collaboration: The Data Preservation Alliance for the Social Sciences. The American Archivist [Internet]. 2009;72 :169-182. Publisher's Version
Gutmann MP, Abrahamson M, Adams MO, Altman M, Arms C, Bollen K, Carlson M, Crabtree J, Donakowski D, King G, et al. From Preserving the Past to Preserving the Future: The Data-PASS Project and the Challenges of Preserving Digital Social Science Data. Library Trends [Internet]. 2009;57 :315–337. Publisher's VersionAbstract
Social science data are an unusual part of the past, present, and future of digital preservation. They are both an unqualified success, due to long-lived and sustainable archival organizations, and in need of further development because not all digital content is being preserved. This article is about the Data Preservation Alliance for Social Sciences (Data-PASS), a project supported by the National Digital Information Infrastructure and Preservation Program (NDIIPP), which is a partnership of five major U.S. social science data archives. Broadly speaking, Data-PASS has the goal of ensuring that at-risk social science data are identified, acquired, and preserved, and that we have a future-oriented organization that could collaborate on those preservation tasks for the future. Throughout the life of the Data-PASS project we have worked to identify digital materials that have never been systematically archived, and to appraise and acquire them. As the project has progressed, however, it has increasingly turned its attention from identifying and acquiring legacy and at-risk social science data to identifying on going and future research projects that will produce data. This article is about the project’s history, with an emphasis on the issues that underlay the transition from looking backward to looking forward.
Altman M. Transformative Effects of NDIIPP, the case of the Henry A. Murray Archive. Library Trends [Internet]. 2009;57 :338-351. Publisher's Version
Altman M. A Fingerprint Method for Verification of Scientific Data. In: A Fingerprint Method for Verification of Scientific Data. Springer-Verlag ; 2008. Publisher's Version
Imai K, King G, Lau O. Toward A Common Framework for Statistical Analysis and Development. Journal of Computational Graphics and Statistics. 2008;17 :1–22.Abstract
We describe some progress toward a common framework for statistical analysis and software development built on and within the R language, including R’s numerous existing packages. The framework we have developed offers a simple unified structure and syntax that can encompass a large fraction of statistical procedures already implemented in R, without requiring any changes in existing approaches. We conjecture that it can be used to encompass and present simply a vast majority of existing statistical methods, regardless of the theory of inference on which they are based, notation with which they were developed, and programming syntax with which they have been implemented. This development enabled us, and should enable others, to design statistical software with a single, simple, and unified user interface that helps overcome the conflicting notation, syntax, jargon, and statistical methods existing across the methods subfields of numerous academic disciplines. The approach also enables one to build a graphical user interface that automatically includes any method encompassed within the framework. We hope that the result of this line of research will greatly reduce the time from the creation of a new statistical innovation to its widespread use by applied researchers whether or not they use or program in R.
King G. An Introduction to the Dataverse Network as an Infrastructure for Data Sharing. Sociological Methods and Research [Internet]. 2007;36 :173-199. Publisher's Version
Altman M, King G. A Proposed Standard for the Scholarly Citation of Quantitative Data. D-Lib Magazine [Internet]. 2007;13. Publisher's VersionAbstract
An essential aspect of science is a community of scholars cooperating and competing in the pursuit of common goals. A critical component of this community is the common language of and the universal standards for scholarly citation, credit attribution, and the location and retrieval of articles and books. We propose a similar universal standard for citing quantitative data that retains the advantages of print citations, adds other components made possible by, and needed due to, the digital form and systematic nature of quantitative data sets, and is consistent with most existing subfield-specific approaches. Although the digital library field includes numerous creative ideas, we limit ourselves to only those elements that appear ready for easy practical use by scientists, journal editors, publishers, librarians, and archivists.
King G. The Future of Replication. International Studies Perspectives. 2003;4 :443–499.Abstract
Since the replication standard was proposed for political science research, more journals have required or encouraged authors to make data available, and more authors have shared their data. The calls for continuing this trend are more persistent than ever, and the agreement among journal editors in this Symposium continues this trend. In this article, I offer a vision of a possible future of the replication movement. The plan is to implement this vision via the Virtual Data Center project, (pre-Dataverse) which – by automating the process of finding, sharing, archiving, subsetting, converting, analyzing, and distributing data – may greatly facilitate adherence to the replication standard.
Altman M, Andreev L, Diggory M, King G, Kiskis D, Kolster E, Verba S. A Digital Library for the Dissemination and Replication of Quantitative Social Science Research. [Internet]. 2001;Social Science Computer Review, 19 :458-470. Publisher's VersionAbstract
The Virtual Data Center (VDC) software is an open-source, digital library system for quantitative data. We discuss what the software does, and how it provides an infrastructure for the management and dissemination of disturbed collections of quantitative data, and the replication of results derived from this data.